BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= test
(114 letters)
Database: /mol/pga/data/blast/pga
593 sequences; 117,681 total letters
Searching.....................................................done
Score E
Sequences producing significant alignments: (bits) Value
CT239 (erythroid differentiation factor) 220 5e-60
CT197 (erythroid differentiation factor) 220 5e-60
CT141 (erythroid differentiation factor) 220 5e-60
CT129 (erythroid differentiation factor) 220 5e-60
CT126 (erythroid differentiation factor) 220 5e-60
CT112 (erythroid differentiation factor) 220 5e-60
CT085 (erythroid differentiation factor) 220 5e-60
CT080 (erythroid differentiation factor) 220 5e-60
CT012 (erythroid differentiation factor) 220 5e-60
PT264 (erythroid differentiation factor) 80 1e-17
XA298 (mouse ESTs; similar to human HBOa: mouse ESTs (simil 24 0.56
XA122 (Null: novel) 22 2.2
XB220 (Isocitrate dehydrogenase 2 (NADP+), mitochondrial) 22 2.2
XB108 (PTPRF interacting protein, binding protein 2) 22 2.2
XB078 (Isocitrate dehydrogenase 2 (NADP+), mitochondrial) 22 2.2
XB076B (PTPRF interacting protein, binding protein 2) 22 2.2
>CT239 (erythroid differentiation factor)
Length = 186
Score = 220 bits (111), Expect = 5e-60
Identities = 114/114 (100%)
Strand = Plus / Plus
Query: 1 gtgggtgtgaattgaaagtctaacacgtgtttctctgtttatggacntggatacccacgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgggtgtgaattgaaagtctaacacgtgtttctctgtttatggacntggatacccacgc 60
Query: 61 cagcatccaccggtcactgccgccgcccacagtgacgtcacccacgaaagcaca 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cagcatccaccggtcactgccgccgcccacagtgacgtcacccacgaaagcaca 114
>CT197 (erythroid differentiation factor)
Length = 186
Score = 220 bits (111), Expect = 5e-60
Identities = 114/114 (100%)
Strand = Plus / Plus
Query: 1 gtgggtgtgaattgaaagtctaacacgtgtttctctgtttatggacntggatacccacgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgggtgtgaattgaaagtctaacacgtgtttctctgtttatggacntggatacccacgc 60
Query: 61 cagcatccaccggtcactgccgccgcccacagtgacgtcacccacgaaagcaca 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cagcatccaccggtcactgccgccgcccacagtgacgtcacccacgaaagcaca 114
>CT141 (erythroid differentiation factor)
Length = 186
Score = 220 bits (111), Expect = 5e-60
Identities = 114/114 (100%)
Strand = Plus / Plus
Query: 1 gtgggtgtgaattgaaagtctaacacgtgtttctctgtttatggacntggatacccacgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgggtgtgaattgaaagtctaacacgtgtttctctgtttatggacntggatacccacgc 60
Query: 61 cagcatccaccggtcactgccgccgcccacagtgacgtcacccacgaaagcaca 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cagcatccaccggtcactgccgccgcccacagtgacgtcacccacgaaagcaca 114
>CT129 (erythroid differentiation factor)
Length = 186
Score = 220 bits (111), Expect = 5e-60
Identities = 114/114 (100%)
Strand = Plus / Plus
Query: 1 gtgggtgtgaattgaaagtctaacacgtgtttctctgtttatggacntggatacccacgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgggtgtgaattgaaagtctaacacgtgtttctctgtttatggacntggatacccacgc 60
Query: 61 cagcatccaccggtcactgccgccgcccacagtgacgtcacccacgaaagcaca 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cagcatccaccggtcactgccgccgcccacagtgacgtcacccacgaaagcaca 114
>CT126 (erythroid differentiation factor)
Length = 186
Score = 220 bits (111), Expect = 5e-60
Identities = 114/114 (100%)
Strand = Plus / Plus
Query: 1 gtgggtgtgaattgaaagtctaacacgtgtttctctgtttatggacntggatacccacgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgggtgtgaattgaaagtctaacacgtgtttctctgtttatggacntggatacccacgc 60
Query: 61 cagcatccaccggtcactgccgccgcccacagtgacgtcacccacgaaagcaca 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cagcatccaccggtcactgccgccgcccacagtgacgtcacccacgaaagcaca 114
>CT112 (erythroid differentiation factor)
Length = 186
Score = 220 bits (111), Expect = 5e-60
Identities = 114/114 (100%)
Strand = Plus / Plus
Query: 1 gtgggtgtgaattgaaagtctaacacgtgtttctctgtttatggacntggatacccacgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgggtgtgaattgaaagtctaacacgtgtttctctgtttatggacntggatacccacgc 60
Query: 61 cagcatccaccggtcactgccgccgcccacagtgacgtcacccacgaaagcaca 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cagcatccaccggtcactgccgccgcccacagtgacgtcacccacgaaagcaca 114
>CT085 (erythroid differentiation factor)
Length = 186
Score = 220 bits (111), Expect = 5e-60
Identities = 114/114 (100%)
Strand = Plus / Plus
Query: 1 gtgggtgtgaattgaaagtctaacacgtgtttctctgtttatggacntggatacccacgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgggtgtgaattgaaagtctaacacgtgtttctctgtttatggacntggatacccacgc 60
Query: 61 cagcatccaccggtcactgccgccgcccacagtgacgtcacccacgaaagcaca 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cagcatccaccggtcactgccgccgcccacagtgacgtcacccacgaaagcaca 114
>CT080 (erythroid differentiation factor)
Length = 186
Score = 220 bits (111), Expect = 5e-60
Identities = 114/114 (100%)
Strand = Plus / Plus
Query: 1 gtgggtgtgaattgaaagtctaacacgtgtttctctgtttatggacntggatacccacgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgggtgtgaattgaaagtctaacacgtgtttctctgtttatggacntggatacccacgc 60
Query: 61 cagcatccaccggtcactgccgccgcccacagtgacgtcacccacgaaagcaca 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cagcatccaccggtcactgccgccgcccacagtgacgtcacccacgaaagcaca 114
>CT012 (erythroid differentiation factor)
Length = 186
Score = 220 bits (111), Expect = 5e-60
Identities = 114/114 (100%)
Strand = Plus / Plus
Query: 1 gtgggtgtgaattgaaagtctaacacgtgtttctctgtttatggacntggatacccacgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgggtgtgaattgaaagtctaacacgtgtttctctgtttatggacntggatacccacgc 60
Query: 61 cagcatccaccggtcactgccgccgcccacagtgacgtcacccacgaaagcaca 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cagcatccaccggtcactgccgccgcccacagtgacgtcacccacgaaagcaca 114
>PT264 (erythroid differentiation factor)
Length = 211
Score = 79.8 bits (40), Expect = 1e-17
Identities = 52/55 (94%), Gaps = 1/55 (1%)
Strand = Plus / Plus
Query: 61 cagcatccaccggtcactgccgccgcc-cacagtgacgtcacccacgaaagcaca 114
|||||||||||||| |||||||||||| ||||||||||||||||||| |||||||
Sbjct: 1 cagcatccaccggttactgccgccgccacacagtgacgtcacccacgnaagcaca 55
>XA298 (mouse ESTs; similar to human HBOa: mouse ESTs (simil
Length = 169
Score = 24.3 bits (12), Expect = 0.56
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 77 ctgccgccgccc 88
||||||||||||
Sbjct: 111 ctgccgccgccc 122
>XA122 (Null: novel)
Length = 108
Score = 22.3 bits (11), Expect = 2.2
Identities = 11/11 (100%)
Strand = Plus / Plus
Query: 29 gtttctctgtt 39
|||||||||||
Sbjct: 31 gtttctctgtt 41
>XB220 (Isocitrate dehydrogenase 2 (NADP+), mitochondrial)
Length = 148
Score = 22.3 bits (11), Expect = 2.2
Identities = 11/11 (100%)
Strand = Plus / Plus
Query: 77 ctgccgccgcc 87
|||||||||||
Sbjct: 13 ctgccgccgcc 23
Score = 22.3 bits (11), Expect = 2.2
Identities = 11/11 (100%)
Strand = Plus / Plus
Query: 77 ctgccgccgcc 87
|||||||||||
Sbjct: 25 ctgccgccgcc 35
>XB108 (PTPRF interacting protein, binding protein 2)
Length = 517
Score = 22.3 bits (11), Expect = 2.2
Identities = 11/11 (100%)
Strand = Plus / Minus
Query: 30 tttctctgttt 40
|||||||||||
Sbjct: 510 tttctctgttt 500
>XB078 (Isocitrate dehydrogenase 2 (NADP+), mitochondrial)
Length = 148
Score = 22.3 bits (11), Expect = 2.2
Identities = 11/11 (100%)
Strand = Plus / Plus
Query: 77 ctgccgccgcc 87
|||||||||||
Sbjct: 13 ctgccgccgcc 23
Score = 22.3 bits (11), Expect = 2.2
Identities = 11/11 (100%)
Strand = Plus / Plus
Query: 77 ctgccgccgcc 87
|||||||||||
Sbjct: 25 ctgccgccgcc 35
>XB076B (PTPRF interacting protein, binding protein 2)
Length = 446
Score = 22.3 bits (11), Expect = 2.2
Identities = 11/11 (100%)
Strand = Plus / Minus
Query: 30 tttctctgttt 40
|||||||||||
Sbjct: 439 tttctctgttt 429
Database: /mol/pga/data/blast/pga
Posted date: Apr 24, 2001 1:53 PM
Number of letters in database: 117,681
Number of sequences in database: 593
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 19
Number of Sequences: 593
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 16
length of query: 114
length of database: 117,681
effective HSP length: 11
effective length of query: 103
effective length of database: 111,158
effective search space: 11449274
effective search space used: 11449274
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 10 (20.3 bits)